Bioconductor Batch Correction

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1.8k

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SC3 Scater Scran scRNA-Seq Batch Correction

updated 5.1 years ago by Vladimir Kiselev ▴ 150 • written 5.1 years ago by hamza_karakurt ▴ 50

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1.5k

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scrna-seq integration batch correction

updated 4.3 years ago by Aaron Lun ★ 28k • written 4.3 years ago by p.joshi ▴ 40

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1.3k

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deseq2 differential expression batch correction

updated 4.9 years ago by Michael Love 42k • written 4.9 years ago by wunderl ▴ 40

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1000

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deseq2 differential expression batch correction design

updated 4.9 years ago by Michael Love 42k • written 4.9 years ago by wunderl ▴ 40

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984

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methylation ComBat Linear models batch correction AIC

updated 4.4 years ago by Kevin Blighe ★ 3.9k • written 4.4 years ago by lucasmiranda42 • 0

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952

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Diffbind ATAC batch correction blocking factor

updated 4.8 years ago by Rory Stark ★ 5.2k • written 4.8 years ago by rm1238 • 0

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617

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DESeq2 batch correction

updated 4.5 years ago by James W. MacDonald 65k • written 4.5 years ago by MT ▴ 10

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Comment: More regions in union when increasing DBA$config$mergeOverlap by Ziliang • 0

I am so confused and frustrated learning to use this software. Isn't how you merge the peaksets one of the most important steps for the com…

Answer: SingleR Label.Ont by Denis • 0

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Comment: deseq2 results by sajadahmad41454 • 0

thank you so much and sorry for bothering you again and again, it is urgent because it is my project deadline. i have removed that sample a…

Comment: deseq2 results by swbarnes2 ★ 1.4k

Ask the people who made the libraires if there was anything unusual in the QC of the outlier sample. Try to figure out what biologically …